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UMR EPIA - Unité Mixte de Recherche d'EPIdémiologie des maladies Animales et zoonotiques





  • Boireau, C., Morignat, É., Cazeau, Jarrige, Jouy, É., Haenni, M., Madec, Leblond, A., Gay (2018). Antimicrobial resistance trends in Escherichia coli isolated from diseased food-producing animals in France: a 14-year period time-series study. Zoonoses and Public Health, 65 (1), e86-e94. [DOI][ProdInra]
  • Charrier, F., Rossi, S., Jori, Maestrini, O., Richomme, C., Casabianca, F., Ducrot, C., Jouve, J., Pavio, N., Le Potier, M.-F. (2018). Aujeszky’s disease and Hepatitis E viruses transmission between domestic pigs and wild boars in Corsica: evaluating the importance of wild/domestic interactions and the efficacy of management measures. Frontiers in Veterinary Science, 5. [DOI][ProdInra]
  • Rojas Lopez, M., Zorgani, M.-A., Kelley, L. A., Bailly, X., Kajava, A. V., Henderson, I. R., Polticelli, F., Pizza, M., Rosini, Desvaux, M. (2018). Identification of the autochaperone domain in the type va secretion system (T5aSS): prevalent feature of autotransporters with a β-helical passenger. Frontiers in Microbiology, 8. [DOI] [ProdInra]


  • Adam, C., Ducrot, C., Paul, M., Fortané, N. (2017). Autonomy under contract: the case of traditional free-range poultry farmers. Review of Agricultural, Food and Environmental Studies, 98, 55-74. [DOI] [ProdInra] 
  • Bailly, X. (2017). Hidden markov phylogenetic models offer an interesting perspective to identify “high risk lineages” of environmental pathogens. Infection, Genetics and Evolution, 55, 45-47. [DOI] [ProdInra]
  • Bouzouraa, T., Cadore, J. L., Chene, J., Goy-Thollot, I., Ponce, F., Chalvet-Monfray, K., Rannou, B., Chabanne, L. (2017). Implication, clinical and biological impact of vector-borne haemopathogens in anaemic dogs in France: a prospective study. Journal of Small Animal Practice. [DOI] [ProdInra]  
  • Cat, J., Beugnet, F., Hoch, T., Jongejan, F., Prangé, A., Chalvet-Monfray, K. (2017). Influence of the spatial heterogeneity in tick abundance in the modeling of the seasonal activity of Ixodes ricinus nymphs in Western Europe. Experimental and Applied Acarology, 71, 115-130. [DOI] [ProdInra]
  • Chadsuthi, S., Bicout, D. J., Wiratsudakul, A., Suwancharoen, D., Petkanchanapong, W., Modchang, C., Triampo, W., Ratanakorn, P., Chalvet-Monfray, K. (2017). Investigation on predominant Leptospira serovars and its distribution in humans and livestock in Thailand, 2010-2015. Plos Neglected Tropical Diseases, 11 (2), e0005228. [DOI] [ProdInra] 
  • Charras-Garrido, M., Deville, Y., Lezaud, P. (2017). Corrective to the article : Extreme Value Analysis - an Introduction Journal de la SFdS Vol. 154 No2, 66-97 . Journal de la Société Française de Statistique, 58 (3), 27-28. [ProdInra]
  • Chastagner, A., Pion, A., Verheyden, H., Lourtet, B., Cargnelutti, B., Picot, D., Poux, V., Bard, E., Plantard, O., McCoy, K., Leblond, A., Vourc'h, G., Bailly, X. (2017). Host specificity, pathogen exposure, and superinfections impact the distribution of Anaplasma phagocytophilum genotypes in ticks, roe deer, and livestock in a fragmented agricultural landscape. Infection, Genetics and Evolution, 55, 31-44. [DOI] [ProdInra]
  • Coly, S., Vincent, N., Vaissière, E., Charras-Garrido, M., Gallay, A., Ducrot, C., Mouly, D. (2017). Waterborne disease outbreak detection: an integrated approach using health administrative databases. Journal of Water and Health, 15 (4), 475-489.  [DOI] [ProdInra]
  • Desvars-Larrive, A., Pascal, M., Gasqui, P., Cosson, J.-F., Benoit, E., Lattard, V., Crespin, L., Lorvelec, O., Pisanu, B., Teynie, A., Vayssier-Taussat, M., Bonnet, S., Marianneau, P., Lacôte, S., Bourhy, P., Berny, P., Pavio, N., Le Poder, S., Gilot-Fromont, E., Jourdain, E., Hammed, A., Fourel, I., Chikh, F., Vourc'h, G. (2017). Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population. Plos One, 12 (9), 1-25. [DOI] [ProdInra]
  • Ducrot, C., Roger, F. (2017). Antibiotiques en agriculture : réduire leur usage tout en limitant les risques sanitaires et socioéconomiques au Sud . Perspective, mai 2017, 1-4. [DOI] [ProdInra]
  • Ducrot, C., Fric, D., Lalmanach, A.-C., Monnet, V., Sanders, P., Schouler, C. (2017). Perspectives d’alternatives thérapeutiques antimicrobiennes aux antibiotiques en élevage. INRA Productions Animales, 30 (1), 77-88. [DOI] [ProdInra]
  • Dugat, T., Leblond, A., Keck, N., Lagrée, A.-C., Desjardins, I., Joulie, A., Pradier, S., Durand, B., Boulouis, H.-J., Haddad, N. (2017). One particular Anaplasma phagocytophilum ecotype infects cattle in the Camargue, France. Parasites and Vectors, 10 (1). [DOI] [ProdInra]  
  • Duong, V., Choeung, R., Gorman, C., Laurent, D., Crabol, Y., Mey, C., Peng, B., Di Francesco, J., Hul, V., Sothy, H., Santy, K., Richner, B., Pommier, J.-D., Sorn, S., Chevalier, V., Buchy, P., de Lamballerie, X., Cappelle, J., Horwood, P. F., Dussart, P.(2017). Isolation and full-genome sequences of Japanese encephalitis virus genotype I strains from Cambodian human patients, mosquitoes and pigs. Journal of General Virology, 98 (9), 2287-2296. [DOI] [ProdInra]  
  • Faverjon, C., Leblond, A., Lecollinet, S., Bødker, R., de Koeijer, A. A., Fischer, E. A. J. (2017). Comparative risk analysis of two Culicoides-borne diseases in horses: equine encephalosis more likely to enter France than African horse sickness. Transboundary and Emerging Diseases, 64 (6), 1825-1836. [DOI] [ProdInra]
  • Faverjon, C., Vial, F., Andersson, M. G., Lecollinet, S., Leblond, A. (2017). Early detection of West Nile virus in France: quantitative assessment of syndromic surveillance system using nervous signs in horses. Epidemiology and Infection, 145 (05), 1044-1057. [DOI] [ProdInra]
  • Gache, K., Rousset, E., Perrin, J. B., De Crémoux, R., Hosteing, S., Jourdain, E., Guatteo, R., Nicollet, P., Touratier, A., Calavas, D., Sala, C. (2017). Estimation of the frequency of Q fever in sheep, goat and cattle herds in France: results of a 3-year study of the seroprevalence of Q fever and excretion level of Coxiella burnetii in abortive episodes. Epidemiology and Infection, 145 (15), 3131-3142. [DOI] [ProdInra] 
  • Gasqui, P., Trommenschlager, J.-M. (2017). A new standard model for milk yield in dairy cows based on udder physiology at the milking-session level. Scientific Reports, 7 (1). [DOI] [ProdInra] 
  • Giannelli, A., Capelli, G., Joachim, A., Hinney, Losson, B., Kirkova, Z., René-Martellet, M., Papadopoulos, E., Farkas, R., Napoli, E., Brianti, Tamponi, C., Varcasia, Margarida Alho, A., Madeira de Carvalho, Cardoso, L., Maia, C., Mircean, V., Mihalca, Miró, G., Schnyder, M., Cantacessi, C., Colella, Cavalera, Latrofa, Annoscia, Knaus, M., Halos, L., Beugnet, Otranto, D.(2017). Lungworms and gastrointestinal parasites of domestic cats: a European perspective. International Journal for Parasitology, 47 (9), 517-528. [DOI] [ProdInra]
  • Hosseini, P. R., Mills, J. N., Prieur-Richard, A.-H., Ezenwa, V. O., Bailly, X., Rizzoli, A., Suzán, G., Vittecoq, M., García-Peña, G. E., Daszak, P., Guégan, J.-F., Roche, B. (2017). Does the impact of biodiversity differ between emerging and endemic pathogens? The need to separate the concepts of hazard and risk. Philosophical Transactions of the Royal Society. B, Biological Sciences, 372 (1722), 20160129. [DOI] [ProdInra] 
  • Joulié, A., Sidi-Boumedine, K., Bailly, X., Gasqui, P., Barry, S., Jaffrelo, L., Poncet, C., Abrial, D., Yang, E., Animal Diagnostic Laboratories Consortium, Leblond, A., Rousset, E., Jourdain, E. (2017). Molecular epidemiology of Coxiella burnetii in French livestock reveals the existence of three main genotype clusters and suggests species-specific associations as well as regional stability. Infection, Genetics and Evolution, 48, 142-149. [DOI] [ProdInra] 
  • Joulié, A., Rousset, E., Gasqui, P., Lepetitcolin, E., Sidi Boumedine, K., Jourdain, E. (2017). Coxiella burnetii circulation in a naturally infected flock of sheep: individual follow-up of antibodies in serum and milk. Applied and Environmental Microbiology, 83 (13). [DOI] [ProdInra]
  • Leblond, A., Lecollinet, S. (2017). Clinical screening of horses and early warning for West Nile virus. Equine Veterinary Education, 29 (6), 325-327. [DOI] [ProdInra] 
  • Ledien, J., Sorn, Hem, S., Huy, R., Buchy, P., Tarantola, A., Cappelle, J. (2017). Assessing the performance of remotely-sensed flooding indicators and their potential contribution to early warning for leptospirosis in Cambodia. Plos One, 12 (7), e0181044. [DOI] [ProdInra] 
  • Legroux, J.-P., Halos, L., René-Martellet, M., Servonnet, Pingret, J.-L., Bourdoiseau, G., Baneth, G., Chabanne, L. (2017). First clinical case report of Cytauxzoon sp. infection in a domestic cat in France. BMC Veterinary Research, 13 (1). [DOI] [ProdInra]
  • Lorvelec, O., Barré, N., Chalifour, J., Teynie, A., Pisanu, B., Hedges, S. B. (2017). Discovery of a population of Spondylurus powelli (Squamata: Mabuyidae) on Île Tintamarre (Saint-Martin, French Antilles) and comments on relationships among skinks of the Anguilla Bank. Caribbean Herpetology, 59, 1-8. [HAL] [ProdInra]
  • Monchatre-Leroy, E., Crespin, L., Boué, F., Marianneau, P., Calavas, D., Hénaux, V. (2017). Spatial and temporal epidemiology of nephropathia epidemica incidence and hantavirus seroprevalence in rodent hosts: identification of the main environmental factors in Europe. Transboundary and Emerging Diseases, 64 (4), 1210-1228. [DOI] [ProdInra] 
  • Perez, G., Bastian, S., Chastagner, A., Agoulon, A., Plantard, O., Vourc'h, G., Butet, A. (2017). Ecological factors influencing small mammal infection by Anaplasma phagocytophilum and Borrelia burgdorferi s.l. in agricultural and forest landscapes. Environmental Microbiology, Early View. [DOI] [ProdInra] 
  • Pouzot-Nevoret, C. (Auteur de correspondance), Cambournac, Violé, Goy-Thollot, Bourdoiseau, G., Barthélemy (2017). Pine processionary caterpillar Thaumetopoea pityocampa envenomation in 109 dogs: A retrospective study. Toxicon, 132, 1-5. [DOI] [ProdInra] 
  • Ras, G., Bailly, X., Chacornac, J.-P., Zuliani, V., Derkx, P., Seibert, T. M., Talon, R., Leroy, S. (2017). Contribution of nitric oxide synthase from coagulase-negative staphylococci to the development of red myoglobin derivatives. International Journal of Food Microbiology. [DOI] [ProdInra] 
  • René-Martellet, M., minard, G., Massot, R., Tran Van, V., Valiente Moro, C., Chabanne, L., Mavingui, P. (2017). Bacterial microbiota associated with Rhipicephalus sanguineus (s.l.) ticks from France, Senegal and Arizona. Parasites and Vectors, 10, 1-10. [DOI] [ProdInra]
  • Salle, G., Cortet, J., Bois, I., Dubès, C., Guyot-Sionest, Q., Larrieu, C., Landrin, V., Majorel, G., Wittreck, S., Woringer, E., Couroucé, A., Guillot, J., Jacquiet, P., Guégnard, F., Blanchard, A., Leblond, A. (2017). Risk factor analysis of equine strongyle resistance to anthelmintics. International Journal for Parasitology: Drugs and Drug Resistance, 7, 407-415.  [DOI] [ProdInra] 
  • Tran, A., L'Ambert, G., Balanca, G., Pradier, S., Grosbois, V., Balenghien, T., Baldet, T., Lecollinet, S., Leblond, A., Gaidet-Drapier, N. (2017). An integrative eco-epidemiological analysis of West Nile Virus transmission. EcoHealth, 14 (3), 474-489. [DOI][ProdInra]


  • Amat, J.-P., Vergne, T., Tapprest, J., Ferry, B., Hans, A., Hendrikx, P., Dufour, B., Leblond, A. (2016). Estimating the incidence of equine viral arteritis and the sensitivity of its surveillance in the French breeding stock. Veterinary Microbiology, 192, 34-42. [DOI] [ProdInra]
  • Ayral, F., Djelouadji, Z., Raton, V., Zilber, A.-L., Gasqui, P., Faure, E., Baurier, F., Vourc'h, G., Combes, B. (2016). Hedgehogs and mustelid species: major carriers of pathogenic Leptospira, a survey in 28 animal species in France (2012 - 2015). Plos One, 11 (9). [DOI][ProdInra]
  • Bahuon, C., Marcillaud-Pitel, C., Bournez, L., Leblond, A., Beck, C., Hars, J., Leparc-Goffart, I., L'Ambert, G., Paty, M.-C., Cavalerie, L., Daix, C., Tritz, P., Durand, B., Zientara, S., Lecollinet, S. (2016). West Nile virus epizootics in the Camargue (France) in 2015 and reinforcement of surveillance and control networks. Revue Scientifique et Technique - Office International des Epizooties, 35 (3), 811-824. [DOI][ProdInra]
  • Beck, C., Bournez, L., Tapprest, J., Foucher, N., Leblond, A., Laloy, E., Garcia, P., Ecolivet, B., Lowenski, S., Poux, A., Troyano-Groux, A., Tritz, P., Bahuon, C., Zientara, S., Lecollinet, S. (2016). Le virus West Nile est de retour dans le sud-est de la France. Semaine Vétérinaire (1657), 32-33. [ProdInra]
  • Bekara, M. E. A., Azizi, L., Bénet, J.- J., Durand, B. (2016). Spatial-temporal variations of bovine tuberculosis incidence in France between 1965 and 2000. Transboundary and Emerging Diseases, 63, 101-113. [DOI][ProdInra]
  • Bouzouraa, T., René-Martellet, M., Chêne, J., Attipa, C., Lebert, I., Chalvet-Monfray, K., Cadoré, J.-L., Halos, L., Chabanne, L. (2016). Clinical and laboratory features of canine Anaplasma platys infection in 32 naturally infected dogs in the Mediterranean basin. Ticks and Tick-Borne Diseases, 7 (6), 1256-1264. [DOI][ProdInra]
  • Chastagner, A., Moinet, M., Perez, G., Roy, E., McCoy, K., Plantard, O., Agoulon, A., Bastian, S., Butet, A., Rantier, Y., Verheyden, H., Cèbe, N., Leblond, A., Vourc'h, G. (2016). Prevalence of Anaplasma phagocytophilum in small rodents in France. Ticks and Tick-Borne Diseases, 7 (5), 988-991. [DOI][ProdInra]
  • Coly, S., Yao, A.-F., Abrial, D., Garrido, M. (2016). Distributions to model overdispersed count data. Journal de la Société Française de Statistique, 157 (2), 39-63. [ProdInra]
  • Ducrot, C. , Gautret, M., Pineau, T., Jestin, A. (2016). Scientific literature on infectious diseases affecting livestock animals, longitudinal worldwide bibliometric analysis. Veterinary Research, 47 (1), 42. [DOI][ProdInra]
  • Ducrot, C., Gautret, M., Pineau, T., Jestin, A. (2016). Recherche française sur les maladies infectieuses des animaux d’élevage : évolution et comparaison à la recherche mondiale. INRA Productions Animales, 29 (2), 75-86. [ProdInra]
  • Faverjon, C., Andersson, M. G., Decors, A., Tapprest, J., Tritz, P., Sandoz, A., Kutasi, O., Sala, C., Leblond, A. (2016). Evaluation of a multivariate syndromic surveillance system for West Nile virus. Vector Borne and Zoonotic Diseases, 16 (6), 382-390. [DOI][ProdInra]
  • Filippone, C., Castel, G., Murri, S., Beaulieux, F., Ermonval, M., Jallet, C., Wise, E. L., Ellis, R. J., Marston, D. A., McElhinney, L. M., Fooks, A. R., Desvars, A., Halos, L., Vourc'h, G., Marianneau, P., Tordo, N. (Auteur de correspondance) (2016). Discovery of hantavirus circulating among Rattus rattus in French Mayotte island, Indian Ocean. Journal of General Virology, 97 (5), 1060-1065. [DOI][ProdInra]
  • Fischer, E. A. J. (Auteur de correspondance), Martínez López, E. P., De Vos, C. J., Faverjon, C. (2016). Quantitative analysis of the probability of introducing equine encephalosis virus (EEV) into The Netherlands. Preventive Veterinary Medicine, 131, 48-59. [DOI][ProdInra]
  • Galan, M., Razzauti Sanfeliu, M., Bard, E., Bernard, M., Brouat, C., Charbonnel, N., Dehne Garcia, A., Loiseau, A., Tatard, C., Tamisier, L., Taussat, M., Vignes, H., Cosson, J.-F., Bik, H. (Editeur) (2016). 16S rRNA amplicon sequencing for épidémiologie surveys of bacteria in wildlife. mSystems, 1 (4), 1-22. [DOI][ProdInra]
  • Gatel, L., Gory, G., Chalvet-Monfray, K., Saunders, J. H., Rault, D. N. (2016). Intra- and inter-observer variability in ultrasonographical measurements of the uterus and ovaries in healthy, non-pregnant queens. Journal of Feline Medicine and Surgery, 18 (2), 110-117. [DOI][ProdInra]
  • Jacquot, M., Abrial, D., Gasqui, P., Bord, S., Marsot, M., Masséglia, S., Pion, A., Poux, V., Zilliox, L., Chapuis, J.-L., Vourc'h, G., Bailly, X. (2016). Multiple independent transmission cycles of a tick-borne pathogen within a local host community. Scientific Reports, 6, 31273. [DOI][ProdInra]
  • Lorusso, V., Wijnveld, M., Majekodunmi, A. O., Dongkum, C., Fajinmi, A., Dogo, A. G., Thrusfield, M., Mugenyi, A., Vaumourin, E., Igweh, A. C., Jongejan, F., Welburn, S. C., Picozzi, K. (2016). Tick-borne pathogens of zoonotic and veterinary importance in Nigerian cattle. Parasites and Vectors, 9. [DOI][ProdInra]
  • Mouly, D., Van Cauteren, D., Vincent, N., Vaissière, E., Beaudeau, P., Ducrot, C., Gallay, A. (2016). Description of two waterborne disease outbreaks in France: a comparative study with data from cohort studies and from health administrative databases. Epidemiology and Infection, 144 (3), 591-601. [DOI][ProdInra]
  • Moutailler, S., Valiente Moro, C., Vaumourin, E., Michelet, L., Tran, F. H., Devillers, E., Cosson, J.-F., Gasqui, P., Tran Van, V., Mavingui, P., Vourc'h, G., Vayssier-Taussat, M. (2016). Co-infection of ticks by pathogens: the rule rather than the exception!. Plos Neglected Tropical Diseases, 11 (3). [DOI][ProdInra]
  • Paul, M., Goutard, F. L., Roulleau, F., Holl, D., Thanapongtharm, W., Roger, F. L., Tran, A. (2016). Quantitative assessment of a spatial multicriteria model for highly pathogenic avian influenza H5N1 in Thailand, and application in Cambodia. Scientific Reports, 6. [DOI][ProdInra]
  • Perez, G., Bastian, S., Agoulon, A., Bouju, A., Durand, A., Faille, F., Lebert, I., Rantier, Y., Plantard, O., Butet, A. (2016). Effect of landscape features on the relationship between Ixodes ricinus ticks and their small mammal hosts. Parasites and Vectors, 9 (1), 20. [DOI][ProdInra]
  • Poulet, L., Ben Khelifa, L., Chaplais, E., Coly, S., Duconseille, A., Esvan, Y., Hamouda, I., Jelassi, M. N., Liborio, B., Pont, C., Vernay, A. (2016). Ma thèse en 180 secondes. La Montagne (28/04/2016), 16. [ProdInra]
  • René-Martellet, M., Callait-Cardinal, M.-P. (2016). N. A. C. conduite à tenir face à une diarrhée chronique chez le furet. Le Nouveau Praticien Vétérinaire, 14 (63), 62-68. [ProdInra]
  • Saubusse, T., Masson, J.-D., Le Dimma, M., Abrial, D., Marcé, C., Martin-Schaller, R., Dupire, A., Le Potier, M.-F., Rossi, S. (2016). How to survey classical swine fever in wild boar (Sus scrofa) after the completion of oral vaccination? Chasing away the ghost of infection at different spatial scales. Veterinary Research, 47 (1). [DOI][ProdInra]
  • Schmidt, S., Saxenhofer, M., Drewes, S., Schlegel, M., Wanka, K. M., Frank, R., Klimpel, S., von Blanckenhagen, F., Maaz, D., Herden, C., Freise, J., Wolf, R., Stubbe, M., Borkenhagen, P., Ansorge, H., Eccard, J. A., Lang, J., Jourdain, E., Jacob, J., Marianneau, P., Heckel, G., Ulrich, R. G. (2016). High genetic structuring of Tula hantavirus. Archives of Virology, 1135-1149. [DOI][ProdInra]
  • Vial, L., Stachurski, F., Leblond, A., Huber, K., Vourc'h, G., René-Martellet, M., Desjardins, I., Balança, G., Grosbois, V., Pradier, S., Gély, M., Appelgren, A., Estrada-Peña, A. (2016). Strong evidence for the presence of the tick Hyalomma marginatum Koch, 1844 in southern continental France. Ticks and Tick-Borne Diseases, 7, 1162-1167. [DOI][ProdInra]
  • Vincent, N., Coly, S., Mouly, D. (2016). La détection d’épidémies de gastro-entérite aiguë d’origine hydrique à partir des données de l’Assurance Maladie. Bulletin de Veille Scientifique (ANSES) (1), 27-31.
  • Vourc'h, G., Abrial, D., Bord, S., Jacquot, M., Masséglia, S., Poux, V., Pisanu, B., Bailly, X., Chapuis, J.- L. (2016). Mapping human risk of infection with Borrelia burgdorferi sensu lato, the agent of Lyme borreliosis, in a periurban forest in France. Ticks and Tick-Borne Diseases, 7, 644-652. [DOI][ProdInra] 

Voir aussi

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